Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00524

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1542
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.26


Found at i:25 original size:12 final size:12

Alignment explanation


    Indices: 8--38  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

          1 ATGGAGA

                        
          8 ATCATCATCACC
          1 ATCATCATCACC

                      * 
         20 ATCATCATCAGC
          1 ATCATCATCACC

                   
         32 ATCATCA
          1 ATCATCA

         39 ATATGGTATG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.35, C:0.35, G:0.03, T:0.26


Consensus pattern (12 bp):   
ATCATCATCACC
Done.