Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24712

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2442
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27


Found at i:1913 original size:3 final size:3

Alignment explanation


    Indices: 1905--1972  Score: 109
    Period size: 3  Copynumber: 22.7  Consensus size: 3

       1895 AGGTAGCAAA

                                                        *                  
       1905 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC AAC CAC CAC CAC CAC
          1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC

                *             *       
       1953 CAC AAC CAC CAC CAT CAC CA
          1 CAC CAC CAC CAC CAC CAC CA

       1973 ACACTAACAT


Statistics
Matches: 59,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   3   59  1.00

ACGTcount: A:0.37, C:0.62, G:0.00, T:0.01


Consensus pattern (3 bp):   
CAC

Done.