Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32491

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 255

Length: 426
ACGTcount: A:0.34, C:0.25, G:0.26, T:0.16


Found at i:32 original size:15 final size:15

Alignment explanation


    Indices: 12--53  Score: 57
    Period size: 15  Copynumber: 2.8  Consensus size: 15

          2 TGGCACCCAA

                          *
         12 AGCCGAGAAGAAGCT
          1 AGCCGAGAAGAAGCC

                     *     
         27 AGCCGAGAAAAAGCC
          1 AGCCGAGAAGAAGCC

                   *    
         42 AGCCGAGGAGAA
          1 AGCCGAGAAGAA

         54 AAAAGCCGAG


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.43, C:0.21, G:0.33, T:0.02


Consensus pattern (15 bp):   
AGCCGAGAAGAAGCC
Done.