Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08761

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3175
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28


Found at i:306 original size:3 final size:3

Alignment explanation


    Indices: 298--346  Score: 89
    Period size: 3  Copynumber: 16.3  Consensus size: 3

        288 CGTTGTTCTC

                                                *                          
        298 GAT GAT GAT GAT GAT GAT GAT GAT GAT AAT GAT GAT GAT GAT GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

             
        346 G
          1 G

        347 GGGTAAAAGG


Statistics
Matches: 44,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   44  1.00

ACGTcount: A:0.35, C:0.00, G:0.33, T:0.33


Consensus pattern (3 bp):   
GAT

Done.