Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08826

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 806

Length: 1344
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26


Found at i:188 original size:12 final size:12

Alignment explanation


    Indices: 171--207  Score: 74
    Period size: 12  Copynumber: 3.1  Consensus size: 12

        161 TGAACAAAAG

                        
        171 AGGTAGCGAATC
          1 AGGTAGCGAATC

                        
        183 AGGTAGCGAATC
          1 AGGTAGCGAATC

                        
        195 AGGTAGCGAATC
          1 AGGTAGCGAATC

             
        207 A
          1 A

        208 ACTGTGACCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.35, C:0.16, G:0.32, T:0.16


Consensus pattern (12 bp):   
AGGTAGCGAATC
Done.