Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37423

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27


Found at i:85 original size:21 final size:21

Alignment explanation


    Indices: 46--86  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         36 GTTTAGGGGC

                          *      
         46 AGAGGTGATGGAGGGAGAGGG
          1 AGAGGTGATGGAGGAAGAGGG

                   *   *        
         67 AGAGGTGGTGGTGGAAGAGG
          1 AGAGGTGATGGAGGAAGAGG

         87 TGGCGATAGA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.27, C:0.00, G:0.61, T:0.12


Consensus pattern (21 bp):   
AGAGGTGATGGAGGAAGAGGG
Done.