Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37082

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2110
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26


Found at i:512 original size:21 final size:22

Alignment explanation


    Indices: 486--526  Score: 59
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        476 GCCAACTCCA

                                   
        486 CTTCATC-GTCTCCA-CAAATAT
          1 CTTCATCTG-CTCCAGCAAATAT

                                
        507 CTTCATCTGCTCCAGCAAAT
          1 CTTCATCTGCTCCAGCAAAT

        527 GGATCTTCTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  21   12  0.67
  22    6  0.33

ACGTcount: A:0.27, C:0.34, G:0.07, T:0.32


Consensus pattern (22 bp):   
CTTCATCTGCTCCAGCAAATAT

Done.