Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04870

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4941
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26


Found at i:176 original size:13 final size:13

Alignment explanation


    Indices: 158--182  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        148 GTTTCAGCAG

                         
        158 AAAATTTGGGGGC
          1 AAAATTTGGGGGC

                        
        171 AAAATTTGGGGG
          1 AAAATTTGGGGG

        183 GTATGGCTCA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.32, C:0.04, G:0.40, T:0.24


Consensus pattern (13 bp):   
AAAATTTGGGGGC
Done.