Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31314

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1833
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27


Found at i:1343 original size:33 final size:33

Alignment explanation


    Indices: 1306--1384  Score: 149
    Period size: 33  Copynumber: 2.4  Consensus size: 33

       1296 CGGTGCTGGT

                                             
       1306 GAAGATGTTGAGATGAGCGATTTCTCAGCTGCA
          1 GAAGATGTTGAGATGAGCGATTTCTCAGCTGCA

                                             
       1339 GAAGATGTTGAGATGAGCGATTTCTCAGCTGCA
          1 GAAGATGTTGAGATGAGCGATTTCTCAGCTGCA

                   *     
       1372 GAAGATGGTGAGA
          1 GAAGATGTTGAGA

       1385 CTAAAGATTC


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  33   45  1.00

ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25


Consensus pattern (33 bp):   
GAAGATGTTGAGATGAGCGATTTCTCAGCTGCA
Done.