Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02085

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 872

Length: 1454
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30


Found at i:299 original size:15 final size:15

Alignment explanation


    Indices: 268--311  Score: 58
    Period size: 15  Copynumber: 3.1  Consensus size: 15

        258 AAAATTAATC

                           
        268 ATGGAGGTG--GA-G
          1 ATGGAGGTGATGATG

                           
        280 ATGGAGGTGATGATG
          1 ATGGAGGTGATGATG

                  *        
        295 ATGGAGATGATGATG
          1 ATGGAGGTGATGATG

              
        310 AT
          1 AT

        312 TATTTTGATG


Statistics
Matches: 28,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  12    9  0.32
  14    2  0.07
  15   17  0.61

ACGTcount: A:0.30, C:0.00, G:0.45, T:0.25


Consensus pattern (15 bp):   
ATGGAGGTGATGATG
Done.