Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00776

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 824

Length: 1374
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34


Found at i:175 original size:22 final size:24

Alignment explanation


    Indices: 148--199  Score: 65
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        138 TCTTCTTTCA

                    *               
        148 TCTTCTTCGC-CT-GCTCCTCTCC
          1 TCTTCTTCACTCTCGCTCCTCTCC

                             *      
        170 TCTTCTTCACTCTCGCTTCTCTCC
          1 TCTTCTTCACTCTCGCTCCTCTCC

                   
        194 T-TTCTT
          1 TCTTCTT

        200 TCCTCGCTAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  22    9  0.35
  23    7  0.27
  24   10  0.38

ACGTcount: A:0.02, C:0.44, G:0.06, T:0.48


Consensus pattern (24 bp):   
TCTTCTTCACTCTCGCTCCTCTCC
Done.