Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30703

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 502

Length: 837
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24


Found at i:576 original size:21 final size:21

Alignment explanation


    Indices: 546--586  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        536 AAGGGAAGGA

                                 
        546 GGTGGCGGCGTCACCGGCGGC
          1 GGTGGCGGCGTCACCGGCGGC

                 *     **       
        567 GGTGGTGGCGTTGCCGGCGG
          1 GGTGGCGGCGTCACCGGCGG

        587 TGGAGGTGAG


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.02, C:0.27, G:0.56, T:0.15


Consensus pattern (21 bp):   
GGTGGCGGCGTCACCGGCGGC
Done.