Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16380

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2922
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26


Found at i:2074 original size:15 final size:15

Alignment explanation


    Indices: 2054--2098  Score: 81
    Period size: 15  Copynumber: 3.0  Consensus size: 15

       2044 TCATGGAATG

                    *      
       2054 CAAATGACGAAAAAT
          1 CAAATGACAAAAAAT

                           
       2069 CAAATGACAAAAAAT
          1 CAAATGACAAAAAAT

                           
       2084 CAAATGACAAAAAAT
          1 CAAATGACAAAAAAT

       2099 TCAGATCTTT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  15   29  1.00

ACGTcount: A:0.64, C:0.13, G:0.09, T:0.13


Consensus pattern (15 bp):   
CAAATGACAAAAAAT
Done.