Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04737

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 423

Length: 705
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22


Found at i:293 original size:9 final size:9

Alignment explanation


    Indices: 272--303  Score: 57
    Period size: 9  Copynumber: 3.7  Consensus size: 9

        262 GGTCTAAGAC

                     
        272 ATGCAAC-G
          1 ATGCAACAG

                     
        280 ATGCAACAG
          1 ATGCAACAG

                     
        289 ATGCAACAG
          1 ATGCAACAG

                  
        298 ATGCAA
          1 ATGCAA

        304 GGACAAATGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   8    7  0.30
   9   16  0.70

ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12


Consensus pattern (9 bp):   
ATGCAACAG
Done.