Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13784

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1308
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26


Found at i:331 original size:3 final size:3

Alignment explanation


    Indices: 325--361  Score: 65
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        315 AGCCGCTGCT

                        *                                    
        325 GCC GCC GCC TCC GCC GCC GCC GCC GCC GCC GCC GCC G
          1 GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC G

        362 GTGCTTACAC


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.00, C:0.65, G:0.32, T:0.03


Consensus pattern (3 bp):   
GCC

Done.