Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32785

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2445
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30


Found at i:220 original size:6 final size:6

Alignment explanation


    Indices: 203--233  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        193 CACCACCATC

                    *                           
        203 ATCATG AGCATG ATCATG ATCATG ATCATG A
          1 ATCATG ATCATG ATCATG ATCATG ATCATG A

        234 CCACCACCAC


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29


Consensus pattern (6 bp):   
ATCATG

Done.