Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28668

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1125
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30


Found at i:809 original size:30 final size:30

Alignment explanation


    Indices: 775--831  Score: 114
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        765 GGGAAATTCT

                                          
        775 GTTACAGAGTGTGCTCCAGGGAACATAACC
          1 GTTACAGAGTGTGCTCCAGGGAACATAACC

                                       
        805 GTTACAGAGTGTGCTCCAGGGAACATA
          1 GTTACAGAGTGTGCTCCAGGGAACATA

        832 GCTGGATGCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21


Consensus pattern (30 bp):   
GTTACAGAGTGTGCTCCAGGGAACATAACC
Done.