Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20110

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23


Found at i:1138 original size:6 final size:6

Alignment explanation


    Indices: 1127--1154  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       1117 TCCACAACCG

                                            
       1127 ACCAAC ACCAAC ACCAAC ACCAAC ACCA
          1 ACCAAC ACCAAC ACCAAC ACCAAC ACCA

       1155 TCATCATCAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00


Consensus pattern (6 bp):   
ACCAAC

Done.