Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30746

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2442
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22


Found at i:1408 original size:39 final size:39

Alignment explanation


    Indices: 1357--1445  Score: 115
    Period size: 39  Copynumber: 2.3  Consensus size: 39

       1347 ACCAGTTTTG

                           *   *     *             
       1357 CCACCACCACCTCCTGTACCTAGAAGTACATCATTACCA
          1 CCACCACCACCTCCTATACATAGAACTACATCATTACCA

              *              *         *           
       1396 CCCCCACCACCTCCTATTCATAGAACTGCATCATTACCA
          1 CCACCACCACCTCCTATACATAGAACTACATCATTACCA

                 *     
       1435 CCACCGCCACC
          1 CCACCACCACC

       1446 ACCACCTATG


Statistics
Matches: 42,  Mismatches: 8, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  39   42  1.00

ACGTcount: A:0.28, C:0.46, G:0.07, T:0.19


Consensus pattern (39 bp):   
CCACCACCACCTCCTATACATAGAACTACATCATTACCA
Done.