Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28735

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 243
ACGTcount: A:0.16, C:0.30, G:0.21, T:0.33


Found at i:201 original size:25 final size:25

Alignment explanation


    Indices: 126--193  Score: 109
    Period size: 25  Copynumber: 2.7  Consensus size: 25

        116 TCCGCATCGT

                    *  *             
        126 CGTCGGCAGCCTTCTGCTACATCTC
          1 CGTCGGCATCCCTCTGCTACATCTC

               *                     
        151 CGTTGGCATCCCTCTGCTACATCTC
          1 CGTCGGCATCCCTCTGCTACATCTC

                              
        176 CGTCGGCATCCCTCTGCT
          1 CGTCGGCATCCCTCTGCT

        194 GCTTCTCCAG


Statistics
Matches: 39,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  25   39  1.00

ACGTcount: A:0.10, C:0.41, G:0.19, T:0.29


Consensus pattern (25 bp):   
CGTCGGCATCCCTCTGCTACATCTC
Done.