Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04297

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 950

Length: 1584
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29


Found at i:766 original size:18 final size:18

Alignment explanation


    Indices: 742--784  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        732 GGATGAACCA

                              
        742 GAAGAAGATGATGAAGGG
          1 GAAGAAGATGATGAAGGG

              *       *    *  
        760 GATGAAGATGGTGAATGG
          1 GAAGAAGATGATGAAGGG

                   
        778 GAAGAAG
          1 GAAGAAG

        785 CGGATGCTGA


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.42, C:0.00, G:0.44, T:0.14


Consensus pattern (18 bp):   
GAAGAAGATGATGAAGGG
Done.