Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10332

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2097
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29


Found at i:1545 original size:12 final size:12

Alignment explanation


    Indices: 1511--1593  Score: 60
    Period size: 12  Copynumber: 6.7  Consensus size: 12

       1501 ATATTCTCCA

                        
       1511 CCACCACCACCT
          1 CCACCACCACCT

                         
       1523 CCATCC-CCACCT
          1 CCA-CCACCACCT

                  *    *
       1535 CCACCATCACCC
          1 CCACCACCACCT

              *          * 
       1547 CCGCCACCTACTTAT
          1 CCACCACC-AC--CT

               *        
       1562 CCATCACCACCT
          1 CCACCACCACCT

                  * *   
       1574 CCACCATCTCCT
          1 CCACCACCACCT

                    
       1586 CCACCACC
          1 CCACCACC

       1594 TTCACCAGTA


Statistics
Matches: 53,  Mismatches: 13, Indels: 10
        0.70            0.17        0.13

Matches are distributed among these distances:
  11    2  0.04
  12   39  0.74
  13    4  0.08
  14    2  0.04
  15    6  0.11

ACGTcount: A:0.22, C:0.61, G:0.01, T:0.16


Consensus pattern (12 bp):   
CCACCACCACCT
Done.