Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16834

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 324
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.27


Found at i:62 original size:21 final size:21

Alignment explanation


    Indices: 38--88  Score: 93
    Period size: 21  Copynumber: 2.4  Consensus size: 21

         28 GATTCCTCCT

                                 
         38 TGGTTGCTCTAGCAGGGGTTG
          1 TGGTTGCTCTAGCAGGGGTTG

                      *          
         59 TGGTTGCTCTGGCAGGGGTTG
          1 TGGTTGCTCTAGCAGGGGTTG

                     
         80 TGGTTGCTC
          1 TGGTTGCTC

         89 CGATTGTGGG


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.06, C:0.16, G:0.43, T:0.35


Consensus pattern (21 bp):   
TGGTTGCTCTAGCAGGGGTTG
Done.