Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38986

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 507

Length: 846
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24


Found at i:491 original size:18 final size:18

Alignment explanation


    Indices: 441--496  Score: 69
    Period size: 18  Copynumber: 3.1  Consensus size: 18

        431 ATGATGATAG

                               
        441 TGATTCCGAGGATGGAAG-
          1 TGATTCCGAGGAT-GAAGA

              *   *  *        
        459 TGGTTCTGATGATGAAGA
          1 TGATTCCGAGGATGAAGA

                              
        477 TGATTCCGAGGATGAAGA
          1 TGATTCCGAGGATGAAGA

              
        495 TG
          1 TG

        497 CAGAGATGTC


Statistics
Matches: 31,  Mismatches: 6, Indels: 2
        0.79            0.15        0.05

Matches are distributed among these distances:
  17    4  0.13
  18   27  0.87

ACGTcount: A:0.29, C:0.09, G:0.36, T:0.27


Consensus pattern (18 bp):   
TGATTCCGAGGATGAAGA
Done.