Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16506

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1773
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20


Found at i:1407 original size:6 final size:6

Alignment explanation


    Indices: 1400--1440  Score: 73
    Period size: 6  Copynumber: 6.8  Consensus size: 6

       1390 TCATATGAAG

                 *                                         
       1400 AAGAAG AAGAAC AAGAAC AAGAAC AAGAAC AAGAAC AAGAA
          1 AAGAAC AAGAAC AAGAAC AAGAAC AAGAAC AAGAAC AAGAA

       1441 GAGGAAAGGA


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.68, C:0.12, G:0.20, T:0.00


Consensus pattern (6 bp):   
AAGAAC

Done.