Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01964

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3393
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29


Found at i:1516 original size:33 final size:33

Alignment explanation


    Indices: 1474--1539  Score: 105
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1464 CCTATCACTA

                                  *          
       1474 GTATACAGGGTCATAAAACACTTCCGGGAAAAG
          1 GTATACAGGGTCATAAAACACTGCCGGGAAAAG

                             *       *       
       1507 GTATACAGGGTCATAAAGCACTGCCTGGAAAAG
          1 GTATACAGGGTCATAAAACACTGCCGGGAAAAG

       1540 CAAGAGGATC


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.38, C:0.18, G:0.26, T:0.18


Consensus pattern (33 bp):   
GTATACAGGGTCATAAAACACTGCCGGGAAAAG
Done.