Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40876

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 303
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:46 original size:21 final size:21

Alignment explanation


    Indices: 6--44  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

          1 ATGGA

                                 
          6 TAAATCCAAGCGACTCTTTCT
          1 TAAATCCAAGCGACTCTTTCT

                               
         27 TAAATCCAAGCGA-TCTTT
          1 TAAATCCAAGCGACTCTTT

         45 TCGTAGGCGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33


Consensus pattern (21 bp):   
TAAATCCAAGCGACTCTTTCT
Done.