Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29823

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3294
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:2162 original size:18 final size:18

Alignment explanation


    Indices: 2139--2173  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2129 ATTCCATTCG

                   *  *       
       2139 AAACTCTGACTCTGTTGA
          1 AAACTCTAACCCTGTTGA

                             
       2157 AAACTCTAACCCTGTTG
          1 AAACTCTAACCCTGTTG

       2174 GACAAGTTTC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31


Consensus pattern (18 bp):   
AAACTCTAACCCTGTTGA
Done.