Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36683

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 941

Length: 1569
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25


Found at i:1266 original size:21 final size:20

Alignment explanation


    Indices: 1240--1281  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 20

       1230 TGATTCTCAT

                                 
       1240 TCATTGTTCGGAGAAATCGAA
          1 TCATTGTTCGGAGAAA-CGAA

                    *  *        
       1261 TCATTGTTGGGGGAAACGAA
          1 TCATTGTTCGGAGAAACGAA

             
       1281 T
          1 T

       1282 ATGACACCAG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  20    5  0.26
  21   14  0.74

ACGTcount: A:0.31, C:0.12, G:0.29, T:0.29


Consensus pattern (20 bp):   
TCATTGTTCGGAGAAACGAA
Done.