Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33850

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 270

Length: 450
ACGTcount: A:0.17, C:0.17, G:0.39, T:0.28


Found at i:418 original size:24 final size:24

Alignment explanation


    Indices: 352--426  Score: 89
    Period size: 24  Copynumber: 3.1  Consensus size: 24

        342 CTTGGGTGGC

                    *           *   
        352 GGCGGTGGTGCTGGTGGTGGAGTT
          1 GGCGGTGGAGCTGGTGGTGGTGTT

              *            *    *    
        376 GGAGGTGGAG-TCGGAGGTGCTGTT
          1 GGCGGTGGAGCT-GGTGGTGGTGTT

                                    
        400 GGCGGTGGAGCTGGTGGTGGTGTT
          1 GGCGGTGGAGCTGGTGGTGGTGTT

               
        424 GGC
          1 GGC

        427 ACTGGTGTCC


Statistics
Matches: 41,  Mismatches: 8, Indels: 4
        0.77            0.15        0.08

Matches are distributed among these distances:
  23    1  0.02
  24   39  0.95
  25    1  0.02

ACGTcount: A:0.07, C:0.09, G:0.57, T:0.27


Consensus pattern (24 bp):   
GGCGGTGGAGCTGGTGGTGGTGTT
Done.