Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09096

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1872
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.26


Found at i:1261 original size:20 final size:20

Alignment explanation


    Indices: 1238--1278  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1228 GGATTTTCCA

                *     *    *    
       1238 ACAATCAACTTCTTGGTGTT
          1 ACAAGCAACTCCTTGATGTT

                                
       1258 ACAAGCAACTCCTTGATGTT
          1 ACAAGCAACTCCTTGATGTT

             
       1278 A
          1 A

       1279 GAAGGAAGCT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34


Consensus pattern (20 bp):   
ACAAGCAACTCCTTGATGTT
Done.