Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10165

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1626
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:633 original size:5 final size:5

Alignment explanation


    Indices: 623--650  Score: 56
    Period size: 5  Copynumber: 5.6  Consensus size: 5

        613 CAAACCTTGA

                                             
        623 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
          1 TTTCT TTTCT TTTCT TTTCT TTTCT TTT

        651 TTCTCGTTTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82


Consensus pattern (5 bp):   
TTTCT

Done.