Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19380

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1947
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26


Found at i:36 original size:6 final size:6

Alignment explanation


    Indices: 25--55  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

         15 TCCTCCCTCT

                                      *         
         25 CTCCAC CTCCAC CTCCAC CTCCAT CTCCAC C
          1 CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC C

         56 GTTACCCTCA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.16, C:0.65, G:0.00, T:0.19


Consensus pattern (6 bp):   
CTCCAC

Done.