Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21716

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 491

Length: 819
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21


Found at i:569 original size:12 final size:12

Alignment explanation


    Indices: 552--583  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        542 AAGGCGGAAA

                        
        552 CATCACCACCAC
          1 CATCACCACCAC

                        
        564 CATCACCACCAC
          1 CATCACCACCAC

              *     
        576 CACCACCA
          1 CATCACCA

        584 ACAACAACAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.34, C:0.59, G:0.00, T:0.06


Consensus pattern (12 bp):   
CATCACCACCAC
Done.