Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06814

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1944
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:938 original size:9 final size:9

Alignment explanation


    Indices: 924--964  Score: 73
    Period size: 9  Copynumber: 4.6  Consensus size: 9

        914 AACTGGTCAT

                   * 
        924 TCCACCATC
          1 TCCACCACC

                     
        933 TCCACCACC
          1 TCCACCACC

                     
        942 TCCACCACC
          1 TCCACCACC

                     
        951 TCCACCACC
          1 TCCACCACC

                 
        960 TCCAC
          1 TCCAC

        965 AGCCAAGGCA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   9   31  1.00

ACGTcount: A:0.22, C:0.63, G:0.00, T:0.15


Consensus pattern (9 bp):   
TCCACCACC

Done.