Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09000

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 586

Length: 978
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:392 original size:3 final size:3

Alignment explanation


    Indices: 386--418  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

        376 TCTTGTTGTA

                                                       
        386 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG

        419 GCGGCAGCAG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33


Consensus pattern (3 bp):   
ATG

Done.