Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22001

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1071
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24


Found at i:796 original size:3 final size:3

Alignment explanation


    Indices: 788--818  Score: 53
    Period size: 3  Copynumber: 10.3  Consensus size: 3

        778 TTCGATGACA

                                            *        
        788 AAG AAG AAG AAG AAG AAG AAG AAG GAG AAG A
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A

        819 GGTAACCGAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00


Consensus pattern (3 bp):   
AAG

Done.