Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01624

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1368
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.23


Found at i:504 original size:15 final size:15

Alignment explanation


    Indices: 493--528  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

        483 GCCGGAGTCT

                           
        493 GATGAAGAGGAGGAA
          1 GATGAAGAGGAGGAA

                       *  *
        508 GATGAAGAGGATGAT
          1 GATGAAGAGGAGGAA

                  
        523 GATGAA
          1 GATGAA

        529 TATGATCCAG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.44, C:0.00, G:0.42, T:0.14


Consensus pattern (15 bp):   
GATGAAGAGGAGGAA
Done.