Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09999

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3135
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.22


Found at i:2723 original size:21 final size:22

Alignment explanation


    Indices: 2687--2727  Score: 66
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       2677 GTCGCAAGCC

                   *              
       2687 TGAGGGAGACAATAAAGTTGCT
          1 TGAGGGACACAATAAAGTTGCT

                                
       2709 TGAGGGACA-AATAAAGTTG
          1 TGAGGGACACAATAAAGTTG

       2728 AAGGAAGCTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   10  0.56
  22    8  0.44

ACGTcount: A:0.39, C:0.07, G:0.32, T:0.22


Consensus pattern (22 bp):   
TGAGGGACACAATAAAGTTGCT
Done.