Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29321

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19


Found at i:46 original size:24 final size:24

Alignment explanation


    Indices: 19--69  Score: 66
    Period size: 24  Copynumber: 2.1  Consensus size: 24

          9 AACAGATGGA

                      **            
         19 AAACCAGAAATTAAACAAGAATCT
          1 AAACCAGAAACCAAACAAGAATCT

                     *    *         
         43 AAACCAGAAGCCAAGCAAGAATCT
          1 AAACCAGAAACCAAACAAGAATCT

               
         67 AAA
          1 AAA

         70 GAAGTTGAAG


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.57, C:0.20, G:0.12, T:0.12


Consensus pattern (24 bp):   
AAACCAGAAACCAAACAAGAATCT
Done.