Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15084

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 276
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25


Found at i:47 original size:12 final size:12

Alignment explanation


    Indices: 30--54  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

         20 ATGGTTATGT

                        
         30 ATCTCCCCCATC
          1 ATCTCCCCCATC

                        
         42 ATCTCCCCCATC
          1 ATCTCCCCCATC

             
         54 A
          1 A

         55 CCACCTCTAC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.20, C:0.56, G:0.00, T:0.24


Consensus pattern (12 bp):   
ATCTCCCCCATC
Done.