Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18800

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1716
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31


Found at i:134 original size:6 final size:6

Alignment explanation


    Indices: 85--131  Score: 85
    Period size: 6  Copynumber: 7.8  Consensus size: 6

         75 TTCATCGCTT

                                                           *      
         85 TCTTCG TCTTCG TCTTCG TCTTCG TCTTCG TCTTCG TCTTCT TCTTC
          1 TCTTCG TCTTCG TCTTCG TCTTCG TCTTCG TCTTCG TCTTCG TCTTC

        132 TTCGGTGATT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.00, C:0.34, G:0.13, T:0.53


Consensus pattern (6 bp):   
TCTTCG
Done.