Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40706

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 800
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28


Found at i:332 original size:17 final size:15

Alignment explanation


    Indices: 302--335  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 15

        292 ACGAAGTCCC

                           
        302 CCTCCCTTTCCCTCA
          1 CCTCCCTTTCCCTCA

                             
        317 CCTCCCTCTCTCCCTCA
          1 CCTCCCT-T-TCCCTCA

              
        334 CC
          1 CC

        336 CGTTGCCCTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    7  0.41
  16    1  0.06
  17    9  0.53

ACGTcount: A:0.06, C:0.65, G:0.00, T:0.29


Consensus pattern (15 bp):   
CCTCCCTTTCCCTCA
Done.