Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11030

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 892

Length: 1488
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26


Found at i:607 original size:21 final size:22

Alignment explanation


    Indices: 565--609  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 22

        555 AGCTGAAATT

                                   
        565 GAGAGTGCAAGAGCAGCAGTTCA
          1 GAGAGTGCAAGAG-AGCAGTTCA

                   *        *     
        588 GAGAGTGGAAGAG-GCCGTTCA
          1 GAGAGTGCAAGAGAGCAGTTCA

             
        609 G
          1 G

        610 GAGCAAGAAC


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  21    8  0.40
  23   12  0.60

ACGTcount: A:0.31, C:0.16, G:0.40, T:0.13


Consensus pattern (22 bp):   
GAGAGTGCAAGAGAGCAGTTCA
Done.