Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39398

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2016
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25


Found at i:1006 original size:21 final size:21

Alignment explanation


    Indices: 982--1039  Score: 80
    Period size: 21  Copynumber: 2.8  Consensus size: 21

        972 TGATGCTGGG

                                 
        982 AGGATGTCATTTGATGCACCA
          1 AGGATGTCATTTGATGCACCA

                    *         *  
       1003 AGGATGTCTTTTGATGCAGCA
          1 AGGATGTCATTTGATGCACCA

              *       *     
       1024 AGAATGTCATGTGATG
          1 AGGATGTCATTTGATG

       1040 ATCCCAGATA


Statistics
Matches: 32,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   32  1.00

ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31


Consensus pattern (21 bp):   
AGGATGTCATTTGATGCACCA
Done.