Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30901

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8225
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31


Found at i:245 original size:6 final size:6

Alignment explanation


    Indices: 234--258  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        224 CTCTATTATC

                                         
        234 CCACAA CCACAA CCACAA CCACAA C
          1 CCACAA CCACAA CCACAA CCACAA C

        259 AGGTCAATAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00


Consensus pattern (6 bp):   
CCACAA

Done.