Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06155

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 262

Length: 438
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32


Found at i:349 original size:33 final size:33

Alignment explanation


    Indices: 312--377  Score: 132
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        302 CATTGATCAA

                                             
        312 AATTCCTGATCATCCAATGCAAATGTTCGTTTT
          1 AATTCCTGATCATCCAATGCAAATGTTCGTTTT

                                             
        345 AATTCCTGATCATCCAATGCAAATGTTCGTTTT
          1 AATTCCTGATCATCCAATGCAAATGTTCGTTTT

        378 CTTAAGTCTA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.27, C:0.21, G:0.12, T:0.39


Consensus pattern (33 bp):   
AATTCCTGATCATCCAATGCAAATGTTCGTTTT
Done.