Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34076

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30


Found at i:1015 original size:21 final size:22

Alignment explanation


    Indices: 974--1016  Score: 54
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        964 TTCTTGAAAG

                            *     
        974 TGCCTATTGGGATCATGGACTT
          1 TGCCTATTGGGATCATCGACTT

                                   
        996 TGCC-ATTGGGATTC-TCGACTT
          1 TGCCTATTGGGA-TCATCGACTT

       1017 CCTTGTTAAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 3
        0.83            0.04        0.13

Matches are distributed among these distances:
  21   13  0.68
  22    6  0.32

ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37


Consensus pattern (22 bp):   
TGCCTATTGGGATCATCGACTT
Done.