Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21911

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1278
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25


Found at i:911 original size:3 final size:3

Alignment explanation


    Indices: 903--929  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        893 ATATGCTTCC

                                               
        903 CAG CAG CAG CAG CAG CAG CAG CAG CAG
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG

        930 GAGATTTTAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00


Consensus pattern (3 bp):   
CAG

Done.