Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09471

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 437

Length: 729
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25


Found at i:186 original size:27 final size:27

Alignment explanation


    Indices: 154--208  Score: 101
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        144 GGATAATTCA

                                       
        154 GAGGAGAAACTGGTTTCTGAGTCAGTT
          1 GAGGAGAAACTGGTTTCTGAGTCAGTT

                     *                 
        181 GAGGAGAAAGTGGTTTCTGAGTCAGTT
          1 GAGGAGAAACTGGTTTCTGAGTCAGTT

             
        208 G
          1 G

        209 GGGTTTCTTT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.25, C:0.09, G:0.36, T:0.29


Consensus pattern (27 bp):   
GAGGAGAAACTGGTTTCTGAGTCAGTT
Done.